Research

Publications

Papers and preprints on agentic systems, neural data, and neural-network models of nervous systems.

Google Scholar ORCID

2026

Octopus Protocol: One-Shot Hardware Discovery and Control for AI Agents via Infrastructure-as-Prompts

Q. Simeon, J. M. Wei, Y. Fan

NeurIPS 2026 Workshop on Agentic Web (accepted) · arXiv:2605.09055

Paper ↗Website ↗Code ↗Blog post ↗
2026

Recovering Sparse Neural Connectivity from Partial Measurements: A Covariance-Based Approach with Granger-Causality Refinement

Q. Simeon

arXiv:2603.18497 (q-bio.QM)

Paper ↗Code ↗
2025

C. elegans as a Platform for Multimodal Neural Data Integration

Q. Simeon

S.M. thesis, Massachusetts Institute of Technology
2024

Homogenized C. elegans Neural Activity and Connectivity Data

Q. Simeon, A. Kashyap, K. P. Kording, E. S. Boyden

arXiv:2411.12091 (q-bio.NC)

Paper ↗Neural data ↗Connectome data ↗Code ↗
2024

Scaling Properties for Artificial Neural Network Models of a Small Nervous System

Q. Simeon, L. Venâncio, M. Skuhersky, A. Nayebi, E. S. Boyden, G. R. Yang

IEEE SoutheastCon 2024, Atlanta, GA, pp. 516–524

Paper ↗bioRxiv ↗
2023

The Time Is Ripe to Reverse Engineer an Entire Nervous System: Simulating Behavior from Neural Interactions

G. Haspel, …, Q. Simeon, … (37 authors)

arXiv:2308.06578 (position paper)

Paper ↗